(You may find publications by members before they joined the lab on their respective homepages.)


S. E. Hulme, S. S. Shevkoplyas, A. P. McGuigan, J. Apfeld, W. Fontana, G. M. Whitesides
"Lifespan-on-a-Chip: microfluidic chambers for performing lifelong observation of C. elegans"
Lab on a Chip, in press (2009)

V. Danos, J. Feret, W. Fontana, R. Harmer and J. Krivine
"Rule-based Modelling and Model Perturbation"
Transactions on Computational Systems Biology, 11:116-137 (2009)

V. Danos, J. Feret, W. Fontana, R. Harmer and J. Krivine
"Investigation of a biological repair scheme"
Membrane Computing, Lecture Notes in Computer Science, 5391:1-12 (2009)

J. Feret, V. Danos, J. Krivine, R. Harmer and W. Fontana
"Internal coarse-graining of molecular systems"
Proc. Natl. Acad. Sci. USA, 106, 6453-6458 (2009)
[main | supplement | combined] doi:10.1073/pnas.0809908106
HMS Focus commentary.

V. M. Savage, E. J. Deeds and W. Fontana
"Sizing up allometric scaling theory"
PLoS Comput Biol 4(9): e1000171 (2008)
[main | supplement | combined] doi:10.1371/journal.pcbi.1000171

V. Danos, J. Feret, W. Fontana, R. Harmer and J. Krivine
"Rule-based modeling, symmetries, refinements"
Formal Methods in Systems Biology 2008, Lecture Notes in Bioinformatics, 5054:103-122 (2008)

W. Fontana
"Systems biology, models, and concurrency"
POPL 2008 (invited talk) [extended abstract] [slides]

S. E. Hulme, S. S. Shevkoplyas, J. Apfeld, W. Fontana and G. M. Whitesides
"A Microfabricated Array of Clamps for Immobilizing and Imaging C. elegans"
Lab on a Chip, 7, 1515-1523 (2007)

V. Danos, J. Feret, W. Fontana, R. Harmer and J. Krivine
"Rule-Based Modeling of Cellular Signaling"
Concurrency Theory (CONCUR) 2007, Lecture Notes in Computer Science, 4703:17-41 (2007)

S. Krishnamurthy, E. Smith, D. Krakauer and W. Fontana
"The stochastic behavior of a molecular switching circuit with feedback"
Biology Direct, 2:13 (31 May 2007)

V. Danos, J. Feret, W. Fontana and J. Krivine
"Abstract interpretation of cellular signalling networks"
Verification, Model Checking, and Abstract Interpretation (VMCAI) 2008, Lecture Notes in Computer Science, 4905:83–97 (2008)

V. Danos, J. Feret, W. Fontana and J. Krivine
"Scalable simulation of cellular signalling networks"
APLAS 2007, Lecture Notes in Computer Science 4807:139–157 (2007)

V.M. Savage, A.P. Allen, J.H. Brown, J.F. Gillooly, A.B. Herman, W.H. Woodruff and G.B. West
"Scaling of number, size, and metabolic rate of cells with body size in mammals"
Proc. Natl. Acad. Sci. USA, 104, 4718-4723 (2007)

V.M. Savage and G.B. West
"A quantitative, theoretical framework for understanding mammalian sleep"
Proc. Natl. Acad. Sci. USA, 104, 1051-1056 (2007)

W.Fontana
[Perspective:] "Pulling Strings"
Science, 314, 1552-1553 (2006)

W.S.Hlavacek, J.R.Faeder, M.L.Blinov, R.G.Posner, M.Hucka and W.Fontana
"Rules for Modeling Signal-Transduction Systems"
Science STKE, Vol. 2006, Issue 344, pp. re6, 18 July 2006 [Abstract]
[DOI: 10.1126/stke.3442006re6]